| Waterbody ID | Resource Name | Alt. Names | Type |
| 21000 | Baker Branch | | Stream |
| 52175 | Bayshore, Lake | | Lake |
| 51118 | Beacon Lake | | Lake |
| 52398 | Big Glenn Lake | | Lake |
| 1405358 | Big Sawgrass | | Lake |
| 1405363 | Big Sawgrass | | Lake |
| 14167 | Big Slough | | Stream |
| 21002 | Boggy Creek | | Stream |
| 21016 | Boggy Creek | | Stream |
| 19650 | Bowlees Creek | | Stream |
| 21024 | Braden River | | Stream |
| 21025 | Bud Slough | | Stream |
| 21071 | Buffalo Creek | | Stream |
| 21036 | Cabbage Slough | | Stream |
| 1003093 | Cason Lake | | Lake |
| 21058 | Cedar Creek | | Stream |
| 21062 | Cedar Drain | | Stream |
| 21023 | Cedar Hammock Creek | | Stream |
| 50791 | Center Lake | | Lake |
| 14099 | Clay Gully | | Stream |
| 21011 | Coker Creek | | Stream |
| 1202528 | Coker Prairie | | Lake |
| 51507 | Colony Lake | | Lake |
| 14366 | Cooper Creek | | Stream |
| 21013 | Corbit Branch | | Stream |
| 21014 | Craig Branch | | Stream |
| 51674 | Crawford Lake | | Lake |
| 25 | Curiosity Creek | | Stream |
| 21003 | Cypress Strand | | Stream |
| 14297 | Deer Prairie Slough | | Stream |
| 57071 | Dog Pond | | Lake |
| 52265 | Eagle Lake | | Lake |
| 21019 | Elder Branch | | Stream |
| 21020 | Fisher Branch | | Stream |
| 21021 | Fort Crawford Creek | | Stream |
| 21022 | Frog Creek | | Stream |
| 21004 | Gamble Creek | | Stream |
| 21005 | Gap Creek | | Stream |
| 21006 | Gates Creek | | Stream |
| 21026 | Gilley Creek | | Stream |
| 22701 | Glenn Creek | | Stream |
| 21027 | Goddard Creek | | Stream |
| 14493 | Gum Slough | | Stream |
| 1132626 | Gum Swamp | | Lake |
| 21028 | Harvey Prong | | Stream |
| 51038 | Heron Lake | | Lake |
| 30846 | Hickory Hammock Creek | | Stream |
| 1343743 | Hog Town Slough | | Lake |
| 51439 | Horseshoe Lake | | Lake |
| 21029 | Johnson Creek | | Stream |
| 21030 | Keen Branch | | Stream |
| 51135 | Lake A | | Lake |
| 51136 | Lake B | | Lake |
| 51132 | Lake C | | Lake |
| 51133 | Lake D | | Lake |
| 14658 | Lake Uplands | | Lake |
| 51510 | Laurel Lake | | Lake |
| 21031 | Little Deep Branch | | Stream |
| 21032 | Little Fort Crawford Creek | | Stream |
| 54 | Little Manatee River | | Stream |
| 55 | Little Manatee River - South Fork | | Stream |
| 3100203 | Little Manatee River Watershed | | Watershed |
| 54009 | Little Sawgrass, Lake | | Lake |
| 21034 | Long Branch | | Stream |
| 21035 | Long Creek | | Stream |
| 51699 | Long Lake | | Lake |
| 57102 | Long Pond | | Lake |
| 21012 | Lower Manatee River | | Stream |
| 20011 | Lower Tampa Bay | | Bay |
| 21018 | Manatee River - East Fork | | Stream |
| 21044 | Manatee River - North Fork | | Stream |
| 21007 | Manatee River Estuary | | Bay |
| 3100202 | Manatee River Watershed | | Watershed |
| 50000 | Manatee, Lake | | Lake |
| 21037 | Maple Creek | | Stream |
| 42789 | Mclewis Bayou | | Stream |
| 21038 | Mcmullen Creek | | Stream |
| 1623014 | Messer Sawgrass | | Lake |
| 20007 | Middle Tampa Bay | | Bay |
| 21039 | Mill Creek | | Stream |
| 1003162 | Mobley Pond | | Lake |
| 51506 | Montego Bay | | Lake |
| 21040 | Moody Branch | | Stream |
| 50004 | Moses Hole | | Lake |
| 21041 | Mossy Island Slough | | Stream |
| 50003 | Mud Lake | | Lake |
| 19655 | Mud Lake Slough | | Stream |
| 14609 | Myakka River | | Stream |
| 3100102 | Myakka River Watershed | | Watershed |
| 30060 | Nonsense Creek | | Stream |
| 53645 | North Lake | | Lake |
| 21045 | Ogleby Creek | | Stream |
| 19065 | Osprey, Lake | Pond P5-2 | Lake |
| 21046 | Owen Branch | | Stream |
| 21047 | Owen Creek | | Stream |
| 52409 | Palm Lake | | Lake |
| 58744 | Palma Sola Bay | | Bay |
| 21048 | Palma Sola Creek | | Stream |
| 52071 | Parrish, Lake | | Lake |
| 3100101 | Peace River Watershed | | Watershed |
| 21049 | Peacock Branch | | Stream |
| 53363 | Peanut Lake | | Lake |
| 21050 | Piney Point Creek | | Stream |
| 50170 | Pleasant Lake | | Lake |
| 21051 | Poley Branch | | Stream |
| 21052 | Rattlesnake Slough | | Stream |
| 56409 | Roxy Pond | | Lake |
| 21053 | Rye Branch | | Stream |
| 21054 | Sand Branch | | Stream |
| 21055 | Sand Branch | | Stream |
| 1337287 | Sand Prairie | | Lake |
| 21056 | Sand Slough | | Stream |
| 14147 | Sarasota Bay | | Bay |
| 3100201 | Sarasota Bay Coastal Watershed | | Watershed |
| 21008 | Sugarhouse Creek | | Stream |
| 51024 | Summerfield Lake | | Lake |
| 51509 | Sunrise Lake | | Lake |
| 51698 | Sunset Lake | | Lake |
| 3100206 | Tampa Bay Coastal Watershed | | Watershed |
| 21059 | Tatum Gully | | Stream |
| 320012 | Tatum Sawgrass | | Lake |
| 21060 | Taylor Creek | | Stream |
| 21010 | Terra Ceia Bay | | Bay |
| 14143 | The Gulf | | Gulf |
| 21061 | Tyre Creek | | Stream |
| 50365 | Uihlein, Lake | | Lake |
| 21015 | Upper Manatee River | | Stream |
| 19648 | Ward Lake | Bill Evers Reservoir, Lake Evers | Lake |
| 21009 | Wares Creek | | Stream |
| 1003461 | Warner East Bayou | | Lake |
| 1003540 | Warner West Bayou | | Lake |
| 21063 | Water Hole Creek | | Stream |
| 21064 | Webb Branch | | Stream |
| 21065 | West Fork Horse Creek | | Stream |
| 21066 | Wildcat Slough | | Stream |
| 21067 | Williams Creek | | Stream |
| 51440 | Wilson Pond | | Lake |
| 21068 | Wingate Creek | | Stream |
| 21069 | Wolf Slough | | Stream |
| 21070 | Youngs Creek | | Stream |